PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.00IE4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 99aa    MW: 11442 Da    PI: 9.5036
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.00IE4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-071158247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      rWTt   +l+ +a + +  +   +W +Ia  +g g  + ++k r+ ++
      Aradu.00IE4 11 SRWTTKQNKLFENALAIYDEEttdRWYKIAMFVG-GTNEVEVKRRYEML 58
                     59*****************99*************.***********887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.9E-4961IPR001005SANT/Myb domain
SuperFamilySSF466892.89E-111166IPR009057Homeodomain-like
CDDcd001673.30E-51259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MASNTLSSPN SRWTTKQNKL FENALAIYDE ETTDRWYKIA MFVGGTNEVE VKRRYEMLLE  60
DIKDIESGKV PLPAYKRNAG CSRVNISNAE QRLRNLKLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-2513981192RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964020.19e-69PREDICTED: protein RADIALIS-like 3
RefseqXP_016182643.19e-69PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB84e-30RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0R0HPY07e-50A0A0R0HPY0_SOYBN; Uncharacterized protein
STRINGGLYMA11G07310.17e-46(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-31RAD-like 1